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Cloned SEACAS for EXODUS library with extra build files for internal package management.
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EXODUS/packages/seacas/applications/fastq/fastq.f

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C Copyright(C) 1999-2022 National Technology & Engineering Solutions
C of Sandia, LLC (NTESS). Under the terms of Contract DE-NA0003525 with
C NTESS, the U.S. Government retains certain rights in this software.
C
C See packages/seacas/LICENSE for details
PROGRAM FASTQ
C***********************************************************************
C FASTQ = A PROGRAM TO QUICKLY GENERATE QUADRALATERAL MESHES
C***********************************************************************
C WRITTEN AND MAINTAINED BY
C TED D. BLACKER
C DIVISION 1523
C VERSION 1.4X
C***********************************************************************
C USES WORK PREVIOUSLY
C COMPLETED BY
C RONDALL E. JONES
C DIVISION 2644
C (QMESH, RENUM, AND QNUM CODES)
C***********************************************************************
C NOTE: FASTQ CALLS SEVERAL GRAPHICS ROUTINES FROM THE PLT PLOT
C PACKAGE, AS WELL AS A NUMBER OF UTILITY ROUTINES FROM
C THE DEPARTMENT 1520 SUPES LIBRARY OF ROUTINES. OF PRIME
C USE IS THE FREE FIELD READER ROUTINES AND THE DYNAMIC
C MEMORY ALLOCATION ROUTINES.
C***********************************************************************
C VARIABLES USED:
C IANS = LOGICAL RESPONSE FROM YES-NO QUESTION
C TITLE = MESH TITLE
C DRWTAB = .TRUE. IF THE DIGITIZER HAS BEEN INITIALIZED TO A DRAWING
C TBZOOM = .TRUE. IF THE DIGITIZER ZOOM HAS BEEN SET
C WROTE = .FALSE. IF THE DATA HAS BEEN CHANGED SINCE THE LAST WRITE
C K = POINTER ARRAY TO DIMENSION A
C A = LARGE ARRAY FOR VARIABLE DIMENSIONING
C NOTE: FOR DYNAMIC VARIABLE DIMENSIONING, THE ROUTINES
C WILL WORK AS CONFIGURED - THE SWITCH TO NORMAL VARIABLE
C DIMENSIONING IS NOTED IN THE CODE AS IT IS NEEDED.
C DYNAMIC VARIABLE DIMENSIONING IS NOT MACHINE INDEPENDENT.
C MERGE = .TRUE. IF TWO DATA FILES ARE TO BE MERGED
C NOROOM = .TRUE. IF MORE ROOM IS NEEDED TO INPUT THE DATA
C BATCH = .TRUE. IF THE PROGRAM IS BEING RUN IN BATCH MODE
C START = .TRUE. IF THE PROGRAM IS JUST STARTING - TRY A READ FIRST
C VAXVMS = .TRUE. IF THE INSTALLATION IS ON A VAX/VMS MACHINE
C (IT IS ASSUMED THAT VAXVMS WILL HAVE MULTIPLE VIRTUAL
C DEVICE DRIVERS AVAILABLE - MVDI)
C***********************************************************************
LOGICAL IANS, DRWTAB, WROTE, OPTIM, MERGE, NOROOM, TBZOOM
LOGICAL LABP, LABL, LABR, AXISD, LABMD, LABI, LABF, LABPB, LABLB,
& LABSBD
LOGICAL FULL, LABSC, LABSZ, AREACG, AXIS, AXIST
LOGICAL LABE, LABO, LABN, LABNB, LABSB, LABM, LABW
LOGICAL BATCH, VAXVMS, START, ALPHA, HARDPL, SNAP
LOGICAL THREE, EIGHT, NINE, REGWRT, BARWRT
LOGICAL EXODUSII
PARAMETER (MSC = 60, MA = 4, MCOM = 50, MSNAP = 100)
C NOTE: IF DYNAMIC VARIABLE DIMENSIONING IS NOT BEING USED, THIS
C PARAMETER STATEMENT SHOULD BE EXPANDED TO THE FORM:
C PARAMETER (MP = 100, ML = 100, MS = 50, MR = 30, MSC = 30, MA = 4)
C IF LARGER DIMENSIONS ARE DESIRED, MP, ML, MS, AND MR CAN
C BE INCREASED ACCORDINGLY.
C ALSO, THE VARIABLE A SHOULD BE DIMENSIONED AS:
C DIMENSION A(MP*17 + ML*31 + MS*10 + MR*15)
CHARACTER DEV1*32, DEV2*32, VERSN*10, NUMBER*80, DATATYPE*8
CHARACTER*9 HARD, SOFT, DATE, TIME
CHARACTER*72 SCHEME, DEFSCH, TITLE, CIN(MCOM)
CHARACTER*8 MEMDBG
CHARACTER*2048 FNAME
DIMENSION K(67), N(29), ISCHM(MSC), SCHEME(MSC), NUMBER(MSC)
DIMENSION IDEV(2), SNAPDX(2,MSNAP), NSNAP(2)
DIMENSION KIN(MCOM), IIN(MCOM), RIN(MCOM)
DIMENSION A(1), IA(1)
EQUIVALENCE (A, IA)
C INITIALIZE VARIABLES
C ... By default, write exodusII format. If the environment variable
C EXT04 is set to 'EXODUSII', write exodusII format. If EXT04
C is set to 'GENESIS', write exodusI format
klen = 0
call exname(-4, datatype, klen)
CALL EXUPCS (datatype(:klen))
if (datatype(:8) .eq. 'EXODUSII') then
exodusII = .TRUE.
else if (datatype(:7) .eq. 'GENESIS') then
exodusII = .FALSE.
else
exodusII = .TRUE.
end if
CALL EXCPUS (TIME1)
TITLE = ' '
DEFSCH = 'M'
VERSN = 'FASTQ-3.24'
DEFSIZ = 0.
SNAP = .TRUE.
TBZOOM = .FALSE.
MERGE = .FALSE.
NSNAP(1) = 0
NSNAP(2) = 0
DO 100 I = 1, MSNAP
SNAPDX(1, I) = 0.0
SNAPDX(2, I) = 0.0
100 CONTINUE
three = .false.
eight = .false.
nine = .false.
optim = .false.
C GET THE CURRENT SYSTEM PARAMETERS AND SET MODE FOR RUNNING
CALL EXPARM (HARD, SOFT, MODE, KCSU, KNSU, IDAU)
C** FILE MODE
klen = 0
call exname (-3, dev2, klen)
if (dev2(:3) .eq. 'BAT') THEN
BATCH = .TRUE.
ALPHA = .TRUE.
START = .FALSE.
CIN(1) = 'READ'
CIN(2) = 'MESH'
CIN(3) = 'PROCESS'
CIN(4) = 'WRITE'
CIN(5) = 'EXIT'
ICOM = 1
JCOM = 5
ELSE
BATCH = .FALSE.
ALPHA = .FALSE.
START = .TRUE.
CIN(1) = 'READ'
ICOM = 1
JCOM = 1
END IF
IF (SOFT(1:3) .EQ. 'VMS') THEN
VAXVMS = .TRUE.
ELSE
VAXVMS = .FALSE.
ENDIF
IF (HARD(1:4) .EQ. 'CRAY' .AND. SOFT(1:3) .NE. 'UNI') THEN
C WE MUST NOW INPUT THE DEVICE IN AN ADHOCK MANNER FROM THE CRAY
CALL EXNAME (75, FNAME, LEN)
DEV1 = FNAME (1:3)
CALL EXUPCS (DEV1)
END IF
C***********************************************************************
TITLE = ' '
DEFSCH = 'M'
WROTE = .TRUE.
DRWTAB = .FALSE.
HARDPL = .FALSE.
DO 110 I = 1, 29
N(I) = 0
110 CONTINUE
C SET UP THE DEFAULT LABELING FOR DATA PLOTTING
AREACG = .FALSE.
AXIS = .FALSE.
AXISD = .FALSE.
AXIST = .FALSE.
FULL = .FALSE.
LABP = .TRUE.
LABL = .TRUE.
LABR = .TRUE.
LABMD = .FALSE.
LABI = .FALSE.
LABF = .FALSE.
LABPB = .FALSE.
LABLB = .FALSE.
LABSBD = .FALSE.
LABSC = .FALSE.
LABSZ = .FALSE.
LABN = .FALSE.
LABE = .FALSE.
LABO = .FALSE.
LABNB = .FALSE.
LABSB = .FALSE.
LABM = .FALSE.
LABW = .FALSE.
C PRINT GREETING AND TRACE
CALL MESSAGE(' ')
CALL MESSAGE('WELCOME TO FASTQ:')
CALL EXDATE (DATE)
CALL EXTIME (TIME)
WRITE (*, *) ' DATE: ', DATE
WRITE (*, *) ' TIME: ', TIME
WRITE (*, *) ' VERSION: ', VERSN
if (exodusII) then
write (*,*) ' Output Format: ExodusII'
else
write (*,*) ' Output Format: Genesis/ExodusI'
end if
CALL MESSAGE(' ')
WRITE (*, *)
* '+++ Copyright(C) 1999-2021 NTESS +++'
WRITE (*, *)
* '+++ The U.S. Government retains a limited license in this +++'
WRITE (*, *)
* '+++ software as prescribed in AL 88-1 and AL 91-7. +++'
WRITE (*, *)
* '+++ Export of this program may require a license from the +++'
WRITE (*, *)
* '+++ United States Government +++'
C IF THE CODE IS BEING RUN ON THE VAX INTERACTIVELY,
C GET WHICH DEVICE IS BEING USED
C AND SET UP THE MULTIPLE DEVICE OUTPUT ROUTINES
IF ((VAXVMS) .AND. (.NOT.BATCH)) THEN
CALL EXNAME (-1, DEV1, LEN)
CALL EXNAME (-2, DEV2, LEN)
CALL VDIQES (10001, KAVAL1)
CALL VDIQES (10002, KAVAL2)
IF (KAVAL1.NE.1) THEN
ALPHA = .TRUE.
CALL MESSAGE('TERMINAL PLOTTING DEVICE NOT AVAILABLE')
ELSE
ALPHA = .FALSE.
END IF
IF (KAVAL2.NE.1) CALL MESSAGE('HARDCOPY DEVICE NOT AVAILABLE')
END IF
IF ((.NOT.BATCH) .AND. (.NOT.ALPHA)) THEN
CALL VDESCP (10003, 0, 0)
CALL PLTINT
CALL VDESCP (10001, 0, 0)
CALL PLTSTV (2, 160.)
END IF
C SET UP THE DUMP LOCATION FOR THE LOG FILE
IDUMP = 0
C-----------------------------------------------------------------------
C THE NEXT SERIES OF STATEMENTS MUST BE TAKEN OUT IF NOT USING
C DYNAMIC VARIABLE DIMENSIONING
C SET UP THE INITIAL POINTER ARRAY SYSTEM
MP = 1000
ML = 1000
MS = 1000
MR = 1000
C INITIALIZE THE DYNAMIC DIMENSIONING ROUTINES
CALL MDINIT (A)
CALL MDFILL(0)
C ... See if supes memory debugging desired
C If EXT99 Environment variable set, turn on supes memory debugging
C The numeric value of the variable is used as the unit to write
C debug information to.
CALL EXNAME (-99, MEMDBG, L)
IF (L .GE. 1) THEN
READ(MEMDBG(:L), '(I8)', ERR=20) IUNIT
CALL MDDEBG(IUNIT)
END IF
20 CONTINUE
C GET INITIAL SPACE IN ARRAY A
CALL MDRSRV ('IPOINT', K(1), MP)
CALL MDRSRV ('COOR', K(2), MP*2)
CALL MDRSRV ('IPBOUN', K(3), MP)
CALL MDRSRV ('ILINE', K(4), ML)
CALL MDRSRV ('LTYPE', K(5), ML)
CALL MDRSRV ('NINT', K(6), ML)
CALL MDRSRV ('FACTOR', K(7), ML)
CALL MDRSRV ('LCON', K(8), ML*3)
CALL MDRSRV ('ILBOUN', K(9), ML)
CALL MDRSRV ('ISBOUN', K(10), ML)
CALL MDRSRV ('ISIDE', K(11), MS)
CALL MDRSRV ('NLPS', K(12), MS)
CALL MDRSRV ('IFLINE', K(13), MS)
CALL MDRSRV ('ILLIST', K(14), MS*3)
CALL MDRSRV ('IBARST', K(15), MS)
CALL MDRSRV ('JMAT', K(16), MS)
CALL MDRSRV ('JCENT', K(17), MS)
CALL MDRSRV ('NLPB', K(18), MS)
CALL MDRSRV ('JFLINE', K(19), MS)
CALL MDRSRV ('JLLIST', K(20), MS*3)
CALL MDRSRV ('IREGN', K(21), MR)
CALL MDRSRV ('IMAT', K(22), MR)
CALL MDRSRV ('NSPR', K(23), MR)
CALL MDRSRV ('IFSIDE', K(24), MR)
CALL MDRSRV ('ISLIST', K(25), MR*4)
CALL MDRSRV ('IRPB', K(26), MR)
CALL MDRSRV ('IPBF', K(27), MP)
CALL MDRSRV ('NPPF', K(28), MP)
CALL MDRSRV ('IFPB', K(29), MP)
CALL MDRSRV ('LISTPB', K(30), MP*2)
CALL MDRSRV ('ILBF', K(31), ML)
CALL MDRSRV ('NLPF', K(32), ML)
CALL MDRSRV ('IFLB', K(33), ML)
CALL MDRSRV ('LISTLB', K(34), ML*2)
CALL MDRSRV ('ISBF', K(35), ML)
CALL MDRSRV ('NSPF', K(36), ML)
CALL MDRSRV ('IFSB', K(37), ML)
CALL MDRSRV ('LISTSB', K(38), ML*2)
CALL MDRSRV ('ATTRIB', K(39), MA*(MR + MS))
CALL MDRSRV ('LINKP', K(40), MP*2)
CALL MDRSRV ('LINKL', K(41), ML*2)
CALL MDRSRV ('LINKS', K(42), MS*2)
CALL MDRSRV ('LINKB', K(43), MS*2)
CALL MDRSRV ('LINKR', K(44), MR*2)
CALL MDRSRV ('LINKM', K(45), (MS + MR)*2)
CALL MDRSRV ('LINKSC', K(46), MR*2)
CALL MDRSRV ('LINKPB', K(47), MP*2)
CALL MDRSRV ('LINKLB', K(48), ML*2)
CALL MDRSRV ('LINKSB', K(49), ML*2)
CALL MDRSRV ('REXTRM', K(50), MR*4)
CALL MDRSRV ('IHOLDP', K(51), MP*2)
CALL MDRSRV ('IHOLDL', K(52), ML*2)
CALL MDRSRV ('IHOLDS', K(53), MS*2)
CALL MDRSRV ('IHOLDB', K(54), MS*2)
CALL MDRSRV ('IHOLDR', K(55), MR*2)
CALL MDRSRV ('IHOLDM', K(56), (MS + MR)*2)
CALL MDRSRV ('IHOLD1', K(57), MP*2)
CALL MDRSRV ('IHOLD2', K(58), ML*2)
CALL MDRSRV ('IHOLD3', K(59), ML*2)
CALL MDRSRV ('IWTPBF', K(60), MP*3)
CALL MDRSRV ('IWTLBF', K(61), ML*3)
CALL MDRSRV ('IWTSBF', K(62), ML*3)
CALL MDRSRV ('RSIZE', K(63), MR)
CALL MDRSRV ('IFHOLE', K(64), MR)
CALL MDRSRV ('NHPR', K(65), MR)
CALL MDRSRV ('IHLIST', K(66), MR)
CALL MDRSRV ('IRGFLG', K(67), MR)
CALL MDSTAT (NERR, MUSED)
IF (NERR .GT. 0) THEN
CALL MDEROR (6)
STOP' '
END IF
C THIS ENDS THE SECTION THAT NEEDS TO BE REMOVED IF NOT USING
C DYNAMIC VARIABLE DIMENSIONING. AS A REPLACEMENT, THE POINTERS
C MUST BE HARD WIRED INTO THE PROGRAM. THIS WOULD BE HANDLED IN THE
C FOLLOWING PATTERN OF STATEMENTS:
C K(1) = 1
C K(2) = K(1) + MP !NOTE - MP IS THE DIMENSION FOR IPOINT, ETC.
C K(3) = K(2) + MP*2
C K(4) = K(3) + MP
C K(5) = K(4) + ML
C ....
C K(67) = K(66) + MR
C-----------------------------------------------------------------------
C ZERO THE LINK ARRAYS
CALL LTNEW (MP, IA(K(40)))
CALL LTNEW (ML, IA(K(41)))
CALL LTNEW (MS, IA(K(42)))
CALL LTNEW (MS, IA(K(43)))
CALL LTNEW (MR, IA(K(44)))
CALL LTNEW (MS + MR, IA(K(45)))
CALL LTNEW (MR, IA(K(46)))
CALL LTNEW (MP, IA(K(47)))
CALL LTNEW (ML, IA(K(48)))
CALL LTNEW (ML, IA(K(49)))
C ENTER FASTQ MAIN OPTION
IZ = 0
120 CONTINUE
IF ((.NOT.BATCH) .AND. (ICOM .GT. JCOM)) THEN
CALL MESSAGE(' ')
CALL FREFLD (IZ, IZ, 'ENTER OPTION: ', MCOM, IOSTAT, JCOM,
& KIN, CIN, IIN, RIN)
ICOM = 1
END IF
C GRAPHICS OPTION - PLOTS FASTQ DATA
IF ((CIN(ICOM)(1:1) .EQ. 'G') .OR.
& (CIN(ICOM)(1:1) .EQ. 'g')) THEN
ICOM = ICOM + 1
CALL GDATA (MP, ML, MS, MR, MSC, MCOM, ICOM, JCOM, CIN, RIN,
& IIN, KIN, IDUMP, N, IA(K(1)), A(K(2)), IA(K(3)), IA(K(4)),
& IA(K(5)), IA(K(6)), A(K(7)), IA(K(8)), IA(K(9)), IA(K(10)),
& IA(K(11)), IA(K(12)), IA(K(13)), IA(K(14)), IA(K(15)),
& IA(K(16)), IA(K(17)), IA(K(18)), IA(K(19)), IA(K(20)),
& IA(K(21)), IA(K(22)), IA(K(23)), IA(K(24)), IA(K(25)),
& IA(K(40)), IA(K(41)), IA(K(42)), IA(K(43)), IA(K(44)),
& IA(K(46)), A(K(50)), A(K(63)), SCHEME, DEFSCH, DEFSIZ,
& TITLE, LABP, LABL, LABR, AXISD, LABMD, LABI, LABF, LABPB,
& LABLB, LABSBD, LABSC, LABSZ, FULL, IDEV, ALPHA, DEV1,
& VAXVMS, VERSN, WROTE, TIME1, HARDPL, BATCH)
C DELETE OPTION - DELETES FASTQ DATA
ELSE IF ((CIN(ICOM)(1:1) .EQ. 'D') .OR.
& (CIN(ICOM)(1:1) .EQ. 'd')) THEN
ICOM = ICOM + 1
CALL DELFSQ (MP, ML, MS, MR, MSC, MCOM, ICOM, JCOM, CIN, RIN,
& IIN, KIN, N, IA(K(3)), IA(K(9)), IA(K(10)), IA(K(12)),
& IA(K(13)), IA(K(14)), IA(K(23)), IA(K(24)), IA(K(25)),
& IA(K(26)), IA(K(27)), IA(K(28)), IA(K(29)), IA(K(30)),
& IA(K(31)), IA(K(32)), IA(K(33)), IA(K(34)), IA(K(35)),
& IA(K(36)), IA(K(37)), IA(K(38)), IA(K(40)), IA(K(41)),
& IA(K(42)), IA(K(43)), IA(K(44)), IA(K(46)), IA(K(47)),
& IA(K(48)), IA(K(49)), IA(K(60)), IA(K(61)), IA(K(62)),
& IA(K(64)), IA(K(65)), IA(K(66)), IA(K(67)), NUMBER, DEFSCH,
& OPTIM, VAXVMS, WROTE, TIME1, BATCH, VERSN)
WROTE = .FALSE.
C FLUSH OPTION - ERASES ALL DATA
ELSE IF ((CIN(ICOM)(1:1) .EQ. 'F') .OR.
& (CIN(ICOM)(1:1) .EQ. 'f')) THEN
ICOM = ICOM + 1
CALL INTRUP ('THIS OPTION ERASES ALL DATA - CONTINUE ANYWAY',
& IANS, MCOM, ICOM, JCOM, CIN, IIN, RIN, KIN)
IF (IANS) THEN
TITLE = ' '
DO 130 I = 1, 29
N(I) = 0
130 CONTINUE
NSNAP(1) = 0
NSNAP(2) = 0
DO 140 I = 1, MSNAP
SNAPDX(1, I) = 0.0
SNAPDX(2, I) = 0.0
140 CONTINUE
TBZOOM = .FALSE.
CALL LTNEW (MP, IA(K(40)))
CALL LTNEW (ML, IA(K(41)))
CALL LTNEW (MS, IA(K(42)))
CALL LTNEW (MS, IA(K(43)))
CALL LTNEW (MR, IA(K(44)))
CALL LTNEW (MS + MR, IA(K(45)))
CALL LTNEW (MR, IA(K(46)))
CALL LTNEW (MP, IA(K(47)))
CALL LTNEW (ML, IA(K(48)))
CALL LTNEW (ML, IA(K(49)))
END IF
C MESH OPTION - BEGINS MESH PROCESSING
ELSE IF ((CIN(ICOM)(1:1) .EQ. 'M') .OR.
& (CIN(ICOM)(1:1) .EQ. 'm')) THEN
ICOM = ICOM + 1
CALL MESH (A, IA, MP, ML, MS, MR, MSC, MA, MCOM, ICOM, JCOM,
& CIN, RIN, IIN, KIN, IDUMP, N, IA(K(1)), A(K(2)), IA(K(3)),
& IA(K(4)), IA(K(5)), IA(K(6)), A(K(7)), IA(K(8)), IA(K(9)),
& IA(K(10)), IA(K(11)), IA(K(12)), IA(K(13)), IA(K(14)),
& IA(K(15)), IA(K(16)), IA(K(17)), IA(K(18)), IA(K(19)),
& IA(K(20)), IA(K(21)), IA(K(22)), IA(K(23)), IA(K(24)),
& IA(K(25)), IA(K(26)), IA(K(27)), IA(K(28)), IA(K(29)),
& IA(K(30)), IA(K(31)), IA(K(32)), IA(K(33)), IA(K(34)),
& IA(K(35)), IA(K(36)), IA(K(37)), IA(K(38)), IA(K(40)),
& IA(K(41)), IA(K(42)), IA(K(43)), IA(K(44)), IA(K(45)),
& IA(K(46)), IA(K(47)), IA(K(48)), IA(K(49)), IA(K(60)),
& IA(K(61)), IA(K(62)), A(K(63)), IA(K(64)), IA(K(65)),
& IA(K(66)), IA(K(67)), ISCHM, SCHEME, NUMBER, DEFSCH, DEFSIZ,
& TITLE, OPTIM, IDEV, ALPHA, DEV1, THREE, EIGHT, NINE, BATCH,
& VAXVMS, VERSN, AXIS, AREACG, LABN, LABE, LABO, LABNB,
& LABSB, LABM, LABW, WROTE, TIME1, HARDPL, EXODUSII)
C SPAWN A PROCESS
ELSE IF ((CIN(ICOM)(1:2) .EQ. 'SP') .OR.
& (CIN(ICOM)(1:2) .EQ. 'sp')) THEN
ICOM = ICOM + 1
CALL SPAWN (VAXVMS)
C STRAIGHTEN OPTION - STRAIGHTEN LINES IN THE X OR Y DIRECTION
ELSE IF ((CIN(ICOM)(1:1) .EQ. 'S') .OR.
& (CIN(ICOM)(1:2) .EQ. 's')) THEN
ICOM = ICOM + 1
CALL STRAIT (MP, ML, MCOM, ICOM, JCOM, CIN, RIN, IIN, KIN,
& IDUMP, N, A(K(2)), IA(K(8)), IA(K(40)), IA(K(41)))
C TABLET DIGITIZE OPTION - DIGITIZE THE GEOMETRY
ELSE IF ((CIN(ICOM)(1:1) .EQ. 'T') .OR.
& (CIN(ICOM)(1:1) .EQ. 't')) THEN
ICOM = ICOM + 1
MERGE = .FALSE.
150 CONTINUE
CALL TABLET (MP, ML, MS, MR, MSNAP, MCOM, ICOM, JCOM, CIN, RIN,
& IIN, KIN, IDUMP, N, IA(K(1)), A(K(2)), IA(K(3)), IA(K(4)),
& IA(K(5)), IA(K(6)), A(K(7)), IA(K(8)), IA(K(9)), IA(K(10)),
& IA(K(11)), IA(K(12)), IA(K(13)), IA(K(14)), IA(K(21)),
& IA(K(22)), IA(K(23)), IA(K(24)), IA(K(25)), IA(K(26)),
& IA(K(27)), IA(K(28)), IA(K(29)), IA(K(30)), IA(K(31)),
& IA(K(32)), IA(K(33)), IA(K(34)), IA(K(35)), IA(K(36)),
& IA(K(37)), IA(K(38)), IA(K(40)), IA(K(41)), IA(K(42)),
& IA(K(44)), IA(K(45)), IA(K(47)), IA(K(48)), IA(K(49)),
& A(K(50)), IA(K(51)), IA(K(52)), IA(K(53)), IA(K(55)),
& IA(K(56)), IA(K(58)), IA(K(59)), IA(K(60)), IA(K(61)),
& IA(K(62)), IA(K(67)), TITLE, NOROOM, DRWTAB, XX1, YY1,
& SCALE, CT, ST, X1, X2, Y1, Y2, ALPHA, DEV1, SNAP, SNAPDX,
& NSNAP, VAXVMS, TBZOOM, AXIST, WROTE, BATCH, VERSN, TIME1)
C EXTEND THE MEMORY AND CONTINUE IF USING DYNAMIC VARIABLE DIMENSIONING.
C IN CONVERTING TO NORMAL VARIABLE DIMENSIONING, THE EXTEND MEMORY LINES
C MUST BE TAKEN OUT, AND AN EXIT OF THE PROGRAM INPUT. THEN THE
C PARAMETER STATEMENT CONTAINING MP, ML, MS, AND MR MUST BE INCREASED TO
C INCREASE DIMESIONING.
IF (NOROOM) THEN
MPOLD = MP
MLOLD = ML
MSOLD = MS
MROLD = MR
MP = NINT(DBLE(MP)*1.5000001)
ML = NINT(DBLE(ML)*1.5000001)
MS = NINT(DBLE(MS)*1.5000001)
MR = NINT(DBLE(MR)*1.5000001)
CALL MDLONG ('IPOINT', K(1), MP)
CALL MDLONG ('COOR', K(2), MP*2)
CALL MDLONG ('IPBOUN', K(3), MP)
CALL MDLONG ('ILINE', K(4), ML)
CALL MDLONG ('LTYPE', K(5), ML)
CALL MDLONG ('NINT', K(6), ML)
CALL MDLONG ('FACTOR', K(7), ML)
CALL MDLONG ('LCON', K(8), ML*3)
CALL MDLONG ('ILBOUN', K(9), ML)
CALL MDLONG ('ISBOUN', K(10), ML)
CALL MDLONG ('ISIDE', K(11), MS)
CALL MDLONG ('NLPS', K(12), MS)
CALL MDLONG ('IFLINE', K(13), MS)
CALL MDLONG ('ILLIST', K(14), MS*3)
CALL MDLONG ('IBARST', K(15), MS)
CALL MDLONG ('JMAT', K(16), MS)
CALL MDLONG ('JCENT', K(17), MS)
CALL MDLONG ('NLPB', K(18), MS)
CALL MDLONG ('JFLINE', K(19), MS)
CALL MDLONG ('JLLIST', K(20), MS*3)
CALL MDLONG ('IREGN', K(21), MR)
CALL MDLONG ('IMAT', K(22), MR)
CALL MDLONG ('NSPR', K(23), MR)
CALL MDLONG ('IFSIDE', K(24), MR)
CALL MDLONG ('ISLIST', K(25), MR*4)
CALL MDLONG ('IRPB', K(26), MR)
CALL MDLONG ('IPBF', K(27), MP)
CALL MDLONG ('NPPF', K(28), MP)
CALL MDLONG ('IFPB', K(29), MP)
CALL MDLONG ('LISTPB', K(30), MP*2)
CALL MDLONG ('ILBF', K(31), ML)
CALL MDLONG ('NLPF', K(32), ML)
CALL MDLONG ('IFLB', K(33), ML)
CALL MDLONG ('LISTLB', K(34), ML*2)
CALL MDLONG ('ISBF', K(35), ML)
CALL MDLONG ('NSPF', K(36), ML)
CALL MDLONG ('IFSB', K(37), ML)
CALL MDLONG ('LISTSB', K(38), ML*2)
CALL MDLONG ('ATTRIB', K(39), MA*(MR + MS))
CALL MDLONG ('LINKP', K(40), MP*2)
CALL MDLONG ('LINKL', K(41), ML*2)
CALL MDLONG ('LINKS', K(42), MS*2)
CALL MDLONG ('LINKB', K(43), MS*2)
CALL MDLONG ('LINKR', K(44), MR*2)
CALL MDLONG ('LINKM', K(45), (MS + MR)*2)
CALL MDLONG ('LINKSC', K(46), MR*2)
CALL MDLONG ('LINKPB', K(47), MP*2)
CALL MDLONG ('LINKLB', K(48), ML*2)
CALL MDLONG ('LINKSB', K(49), ML*2)
CALL MDLONG ('REXTRM', K(50), MR*4)
CALL MDLONG ('IHOLDP', K(51), MP*2)
CALL MDLONG ('IHOLDL', K(52), ML*2)
CALL MDLONG ('IHOLDS', K(53), MS*2)
CALL MDLONG ('IHOLDB', K(54), MS*2)
CALL MDLONG ('IHOLDR', K(55), MR*2)
CALL MDLONG ('IHOLDM', K(56), (MS + MR)*2)
CALL MDLONG ('IHOLD1', K(57), MP*2)
CALL MDLONG ('IHOLD2', K(58), ML*2)
CALL MDLONG ('IHOLD3', K(59), ML*2)
CALL MDLONG ('IWTPBF', K(60), MP*3)
CALL MDLONG ('IWTLBF', K(61), ML*3)
CALL MDLONG ('IWTSBF', K(62), ML*3)
CALL MDLONG ('RSIZE', K(63), MR)
CALL MDLONG ('IFHOLE', K(64), MR)
CALL MDLONG ('NHPR', K(65), MR)
CALL MDLONG ('IHLIST', K(66), MR)
CALL MDLONG ('IRGFLG', K(67), MR)
CALL MDSTAT (NERR, MUSED)
IF (NERR .GT. 0) THEN
CALL MDEROR (6)
STOP' '
END IF
C RESORT THE LINK ARRAYS
CALL LTNEW (ML, IA(K(51)))
CALL LTADD (ML, MLOLD, N(1), IA(K(40)), IA(K(51)))
CALL LTNEW (ML, IA(K(51)))
CALL LTNEW (ML, IA(K(52)))
CALL LTADD (ML, MLOLD, N(2), IA(K(41)), IA(K(52)))
CALL LTNEW (ML, IA(K(52)))
CALL LTNEW (MS, IA(K(53)))
CALL LTADD (MS, MSOLD, N(3), IA(K(42)), IA(K(53)))
CALL LTNEW (MS, IA(K(53)))
CALL LTNEW (MS, IA(K(54)))
CALL LTADD (MS, MSOLD, N(5), IA(K(43)), IA(K(54)))
CALL LTNEW (MS, IA(K(54)))
CALL LTNEW (MR, IA(K(55)))
CALL LTADD (MR, MROLD, N(7), IA(K(44)), IA(K(55)))
CALL LTNEW (MS + MR, IA(K(56)))
CALL LTADD (MS + MR, MSOLD + MROLD, MSOLD + MROLD,
& IA(K(45)), IA(K(56)))
CALL LTNEW (MS + MR, IA(K(56)))
CALL LTNEW (MR, IA(K(55)))
CALL LTADD (MR, MROLD, N(8), IA(K(46)), IA(K(55)))
CALL LTNEW (MR, IA(K(55)))
CALL LTNEW (MP, IA(K(57)))
CALL LTADD (MP, MPOLD, N(11), IA(K(47)), IA(K(57)))
CALL LTNEW (MP, IA(K(57)))
CALL LTNEW (ML, IA(K(58)))
CALL LTADD (ML, MLOLD, N(13), IA(K(48)), IA(K(58)))
CALL LTNEW (ML, IA(K(58)))
CALL LTNEW (ML, IA(K(59)))
CALL LTADD (ML, MLOLD, N(15), IA(K(49)), IA(K(59)))
CALL MESSAGE('DIGITIZATION CAN NOW BE CONTINUED')
GO TO 150
END IF
WROTE = .FALSE.
C KEY-IN OPTION - TYPE IN THE DATA FROM THE KEYBOARD
ELSE IF ((CIN(ICOM)(1:1) .EQ. 'K') .OR.
& (CIN(ICOM)(1:1) .EQ. 'k')) THEN
ICOM = ICOM + 1
MERGE = .FALSE.
WROTE = .FALSE.
160 CONTINUE
CALL KEYIN (MP, ML, MS, MR, MSC, MA, MCOM, ICOM, JCOM, CIN,
& RIN, IIN, KIN, IDUMP, N, IA(K(1)), A(K(2)), IA(K(3)),
& IA(K(4)), IA(K(5)), IA(K(6)), A(K(7)), IA(K(8)), IA(K(9)),
& IA(K(10)), IA(K(11)), IA(K(12)), IA(K(13)), IA(K(14)),
& IA(K(15)), IA(K(16)), IA(K(17)), IA(K(18)), IA(K(19)),
& IA(K(20)), IA(K(21)), IA(K(22)), IA(K(23)), IA(K(24)),
& IA(K(25)), IA(K(26)), IA(K(27)), IA(K(28)), IA(K(29)),
& IA(K(30)), IA(K(31)), IA(K(32)), IA(K(33)), IA(K(34)),
& IA(K(35)), IA(K(36)), IA(K(37)), IA(K(38)), IA(K(40)),
& IA(K(41)), IA(K(42)), IA(K(43)), IA(K(44)), IA(K(45)),
& IA(K(46)), IA(K(47)), IA(K(48)), IA(K(49)), IA(K(51)),
& IA(K(52)), IA(K(53)), IA(K(54)), IA(K(55)), IA(K(56)),
& IA(K(57)), IA(K(58)), IA(K(59)), IA(K(60)), IA(K(61)),
& IA(K(62)), A(K(63)), IA(K(64)), IA(K(65)), IA(K(66)),
& IA(K(67)), ISCHM, SCHEME, NUMBER, DEFSCH, DEFSIZ, TITLE,
& OPTIM, THREE, EIGHT, NINE, NOROOM, VAXVMS, WROTE, TIME1,
& VERSN, BATCH)
IF (NOROOM) THEN
MPOLD = MP
MLOLD = ML
MSOLD = MS
MROLD = MR
MP = NINT(DBLE(MP)*1.5000001)
ML = NINT(DBLE(ML)*1.5000001)
MS = NINT(DBLE(MS)*1.5000001)
MR = NINT(DBLE(MR)*1.5000001)
CALL MDLONG ('IPOINT', K(1), MP)
CALL MDLONG ('COOR', K(2), MP*2)
CALL MDLONG ('IPBOUN', K(3), MP)
CALL MDLONG ('ILINE', K(4), ML)
CALL MDLONG ('LTYPE', K(5), ML)
CALL MDLONG ('NINT', K(6), ML)
CALL MDLONG ('FACTOR', K(7), ML)
CALL MDLONG ('LCON', K(8), ML*3)
CALL MDLONG ('ILBOUN', K(9), ML)
CALL MDLONG ('ISBOUN', K(10), ML)
CALL MDLONG ('ISIDE', K(11), MS)
CALL MDLONG ('NLPS', K(12), MS)
CALL MDLONG ('IFLINE', K(13), MS)
CALL MDLONG ('ILLIST', K(14), MS*3)
CALL MDLONG ('IBARST', K(15), MS)
CALL MDLONG ('JMAT', K(16), MS)
CALL MDLONG ('JCENT', K(17), MS)
CALL MDLONG ('NLPB', K(18), MS)
CALL MDLONG ('JFLINE', K(19), MS)
CALL MDLONG ('JLLIST', K(20), MS*3)
CALL MDLONG ('IREGN', K(21), MR)
CALL MDLONG ('IMAT', K(22), MR)
CALL MDLONG ('NSPR', K(23), MR)
CALL MDLONG ('IFSIDE', K(24), MR)
CALL MDLONG ('ISLIST', K(25), MR*4)
CALL MDLONG ('IRPB', K(26), MR)
CALL MDLONG ('IPBF', K(27), MP)
CALL MDLONG ('NPPF', K(28), MP)
CALL MDLONG ('IFPB', K(29), MP)
CALL MDLONG ('LISTPB', K(30), MP*2)
CALL MDLONG ('ILBF', K(31), ML)
CALL MDLONG ('NLPF', K(32), ML)
CALL MDLONG ('IFLB', K(33), ML)
CALL MDLONG ('LISTLB', K(34), ML*2)
CALL MDLONG ('ISBF', K(35), ML)
CALL MDLONG ('NSPF', K(36), ML)
CALL MDLONG ('IFSB', K(37), ML)
CALL MDLONG ('LISTSB', K(38), ML*2)
CALL MDLONG ('ATTRIB', K(39), MA*(MR + MS))
CALL MDLONG ('LINKP', K(40), MP*2)
CALL MDLONG ('LINKL', K(41), ML*2)
CALL MDLONG ('LINKS', K(42), MS*2)
CALL MDLONG ('LINKB', K(43), MS*2)
CALL MDLONG ('LINKR', K(44), MR*2)
CALL MDLONG ('LINKM', K(45), (MS + MR)*2)
CALL MDLONG ('LINKSC', K(46), MR*2)
CALL MDLONG ('LINKPB', K(47), MP*2)
CALL MDLONG ('LINKLB', K(48), ML*2)
CALL MDLONG ('LINKSB', K(49), ML*2)
CALL MDLONG ('REXTRM', K(50), MR*4)
CALL MDLONG ('IHOLDP', K(51), MP*2)
CALL MDLONG ('IHOLDL', K(52), ML*2)
CALL MDLONG ('IHOLDS', K(53), MS*2)
CALL MDLONG ('IHOLDB', K(54), MS*2)
CALL MDLONG ('IHOLDR', K(55), MR*2)
CALL MDLONG ('IHOLDM', K(56), (MS + MR)*2)
CALL MDLONG ('IHOLD1', K(57), MP*2)
CALL MDLONG ('IHOLD2', K(58), ML*2)
CALL MDLONG ('IHOLD3', K(59), ML*2)
CALL MDLONG ('IWTPBF', K(60), MP*3)
CALL MDLONG ('IWTLBF', K(61), ML*3)
CALL MDLONG ('IWTSBF', K(62), ML*3)
CALL MDLONG ('RSIZE', K(63), MR)
CALL MDLONG ('IFHOLE', K(64), MR)
CALL MDLONG ('NHPR', K(65), MR)
CALL MDLONG ('IHLIST', K(66), MR)
CALL MDLONG ('IRGFLG', K(67), MR)
CALL MDSTAT (NERR, MUSED)
IF (NERR .GT. 0) THEN
CALL MDEROR (6)
STOP' '
END IF
C RESORT THE LINK ARRAYS
CALL LTNEW (ML, IA(K(51)))
CALL LTADD (ML, MLOLD, N(1), IA(K(40)), IA(K(51)))
CALL LTNEW (ML, IA(K(51)))
CALL LTNEW (ML, IA(K(52)))
CALL LTADD (ML, MLOLD, N(2), IA(K(41)), IA(K(52)))
CALL LTNEW (ML, IA(K(52)))
CALL LTNEW (MS, IA(K(53)))
CALL LTADD (MS, MSOLD, N(3), IA(K(42)), IA(K(53)))
CALL LTNEW (MS, IA(K(53)))
CALL LTNEW (MS, IA(K(54)))
CALL LTADD (MS, MSOLD, N(5), IA(K(43)), IA(K(54)))
CALL LTNEW (MS, IA(K(54)))
CALL LTNEW (MR, IA(K(55)))
CALL LTADD (MR, MROLD, N(7), IA(K(44)), IA(K(55)))
CALL LTNEW (MS + MR, IA(K(56)))
CALL LTADD (MS + MR, MSOLD + MROLD, MSOLD + MROLD,
& IA(K(45)), IA(K(56)))
CALL LTNEW (MS + MR, IA(K(56)))
CALL LTNEW (MR, IA(K(55)))
CALL LTADD (MR, MROLD, N(8), IA(K(46)), IA(K(55)))
CALL LTNEW (MR, IA(K(55)))
CALL LTNEW (MP, IA(K(57)))
CALL LTADD (MP, MPOLD, N(11), IA(K(47)), IA(K(57)))
CALL LTNEW (MP, IA(K(57)))
CALL LTNEW (ML, IA(K(58)))
CALL LTADD (ML, MLOLD, N(13), IA(K(48)), IA(K(58)))
CALL LTNEW (ML, IA(K(58)))
CALL LTNEW (ML, IA(K(59)))
CALL LTADD (ML, MLOLD, N(15), IA(K(49)), IA(K(59)))
CALL MESSAGE('KEYIN OPTION CAN NOW BE CONTINUED')
GO TO 160
END IF
C LIST OPTION - LISTS FASTQ DATA
ELSE IF ((CIN(ICOM)(1:1) .EQ. 'L') .OR.
& (CIN(ICOM)(1:1) .EQ. 'l')) THEN
ICOM = ICOM + 1
CALL LIST (MP, ML, MS, MR, MSC, MCOM, ICOM, JCOM, CIN, RIN,
& IIN, KIN, N, IA(K(1)), A(K(2)), IA(K(3)), IA(K(4)),
& IA(K(5)), IA(K(6)), A(K(7)), IA(K(8)), IA(K(9)), IA(K(10)),
& IA(K(11)), IA(K(12)), IA(K(13)), IA(K(14)), IA(K(15)),
& IA(K(16)), IA(K(17)), IA(K(18)), IA(K(19)), IA(K(20)),
& IA(K(21)), IA(K(22)), IA(K(23)), IA(K(24)), IA(K(25)),
& IA(K(26)), IA(K(27)), IA(K(28)), IA(K(29)), IA(K(30)),
& IA(K(31)), IA(K(32)), IA(K(33)), IA(K(34)), IA(K(35)),
& IA(K(36)), IA(K(37)), IA(K(38)), IA(K(40)), IA(K(41)),
& IA(K(42)), IA(K(43)), IA(K(44)), IA(K(46)), IA(K(47)),
& IA(K(48)), IA(K(49)), IA(K(60)), IA(K(61)), IA(K(62)),
& A(K(63)), IA(K(64)), IA(K(65)), IA(K(66)), IA(K(67)), ISCHM,
& SCHEME, NUMBER, DEFSCH, DEFSIZ, TITLE, OPTIM, THREE, EIGHT,
& NINE, VAXVMS, WROTE, TIME1, VERSN, BATCH)
C READ OPTION - READS FASTQ DATA
ELSE IF (((CIN(ICOM)(1:1) .EQ. 'R') .OR.
& (CIN(ICOM)(1:1) .EQ. 'r')) .AND.
& (CIN(ICOM)(2:2).NE.'P') .AND. (CIN(ICOM)(2:2).NE.'p') .AND.
& (CIN(ICOM)(2:2).NE.'W') .AND. (CIN(ICOM)(2:2).NE.'w')) THEN
ICOM = ICOM + 1
IF ((N(1) .GT. 0) .OR. (N(2) .GT. 0)) THEN
C CHECK TO SEE IF A FASTQ DATA MERGING IS DESIRED
CALL INTRUP ('MERGE FILE WITH EXISTING DATA', MERGE, MCOM,
& ICOM, JCOM, CIN, IIN, RIN, KIN)
IF (MERGE) THEN
CALL LTNEW (MP, IA(K(51)))
CALL LTNEW (ML, IA(K(52)))
CALL LTNEW (MS, IA(K(53)))
CALL LTNEW (MS, IA(K(54)))
CALL LTNEW (MR, IA(K(55)))
CALL LTNEW (MS + MR, IA(K(56)))
CALL LTNEW (MP, IA(K(57)))
CALL LTNEW (ML, IA(K(58)))
CALL LTNEW (ML, IA(K(59)))
ELSE
IF (.NOT.WROTE) THEN
CALL MESSAGE('CONTINUATION WILL OVERWRITE OLD DATA')
CALL INTRUP('DO YOU WISH TO CONTINUE', IANS, MCOM,
& ICOM, JCOM, CIN, IIN, RIN, KIN)
IF (.NOT.IANS) GO TO 120
END IF
DO 170 I = 1, 29
N(I) = 0
170 CONTINUE
CALL LTNEW (MP, IA(K(40)))
CALL LTNEW (ML, IA(K(41)))
CALL LTNEW (MS, IA(K(42)))
CALL LTNEW (MS, IA(K(43)))
CALL LTNEW (MR, IA(K(44)))
CALL LTNEW (MS + MR, IA(K(45)))
CALL LTNEW (MR, IA(K(46)))
CALL LTNEW (MP, IA(K(47)))
CALL LTNEW (ML, IA(K(48)))
CALL LTNEW (ML, IA(K(49)))
END IF
END IF
IUNIT = 1
ITRY = 0
180 CONTINUE
IF (ITRY .GT. 0) THEN
CALL STRLNG (FNAME, LEN)
IF (FNAME(1:6).NE.'FOR001') WRITE (*, 10000) FNAME(1:LEN)
END IF
ITRY = ITRY + 1
IF (((ITRY .LE. 3) .AND. (.NOT.BATCH)) .OR.
& ((BATCH) .AND. (ITRY .LE. 1)) .OR.
& ((START) .AND. (.NOT.BATCH))) THEN
IUNIT = 1
IF (BATCH) THEN
IDUMP = 6
MERGE = .FALSE.
CIN(1) = 'MESH'
CIN(2) = 'PROC'
CIN(3) = 'WRITE'
CIN(4) = 'EXIT'
ICOM = 1
JCOM = 4
CALL EXNAME (IUNIT, FNAME, LN)
OPEN (UNIT = IUNIT, FILE = FNAME(1:LN), STATUS = 'OLD',
& ERR = 180)
ELSE IF (START) THEN
START = .FALSE.
CALL EXNAME (IUNIT, FNAME, LN)
IF ((.NOT. VAXVMS) .AND. (FNAME .EQ. 'tty')) GO TO 120
OPEN (UNIT = IUNIT, FILE = FNAME(1:LN), STATUS = 'OLD',
& ERR = 120)
ELSE
IF (ICOM .LE. JCOM) THEN
FNAME = CIN(ICOM)
ICOM = ICOM + 1
ELSE
CALL INQSTR ('INPUT FILE: ', FNAME)
END IF
OPEN (UNIT = IUNIT, FILE = FNAME, STATUS = 'OLD',
& ERR = 180)
IDUMP = 0
END IF
190 CONTINUE
REWIND IUNIT
CALL RDFSQ (MP, ML, MS, MR, MSNAP, MSC, MA, IUNIT, IDUMP, N,
& IA(K(1)), A(K(2)), IA(K(3)), IA(K(4)), IA(K(5)),
& IA(K(6)), A(K(7)), IA(K(8)), IA(K(9)), IA(K(10)),
& IA(K(11)), IA(K(12)), IA(K(13)), IA(K(14)), IA(K(15)),
& IA(K(16)), IA(K(17)), IA(K(18)), IA(K(19)), IA(K(20)),
& IA(K(21)), IA(K(22)), IA(K(23)), IA(K(24)), IA(K(25)),
& IA(K(26)), IA(K(27)), IA(K(28)), IA(K(29)), IA(K(30)),
& IA(K(31)), IA(K(32)), IA(K(33)), IA(K(34)), IA(K(35)),
& IA(K(36)), IA(K(37)), IA(K(38)), A(K(39)), IA(K(40)),
& IA(K(41)), IA(K(42)), IA(K(43)), IA(K(44)), IA(K(45)),
& IA(K(46)), IA(K(47)), IA(K(48)), IA(K(49)), IA(K(51)),
& IA(K(52)), IA(K(53)), IA(K(54)), IA(K(55)), IA(K(56)),
& IA(K(57)), IA(K(58)), IA(K(59)), IA(K(60)), IA(K(61)),
& IA(K(62)), A(K(63)), IA(K(64)), IA(K(65)), IA(K(66)),
& IA(K(67)), ISCHM, SCHEME, NUMBER, DEFSCH, DEFSIZ, TITLE,
& OPTIM, MERGE, THREE, EIGHT, NINE, SNAP, SNAPDX, NSNAP,
& RATIO, NOROOM, EXODUSII)
IF (NOROOM) THEN
MPOLD = MP
MLOLD = ML
MSOLD = MS
MROLD = MR
MP = NINT(DBLE(MP)*RATIO)
ML = NINT(DBLE(ML)*RATIO)
MS = NINT(DBLE(MS)*RATIO)
MR = NINT(DBLE(MR)*RATIO)
CALL MDLONG ('IPOINT', K(1), MP)
CALL MDLONG ('COOR', K(2), MP*2)
CALL MDLONG ('IPBOUN', K(3), MP)
CALL MDLONG ('ILINE', K(4), ML)
CALL MDLONG ('LTYPE', K(5), ML)
CALL MDLONG ('NINT', K(6), ML)
CALL MDLONG ('FACTOR', K(7), ML)
CALL MDLONG ('LCON', K(8), ML*3)
CALL MDLONG ('ILBOUN', K(9), ML)
CALL MDLONG ('ISBOUN', K(10), ML)
CALL MDLONG ('ISIDE', K(11), MS)
CALL MDLONG ('NLPS', K(12), MS)
CALL MDLONG ('IFLINE', K(13), MS)
CALL MDLONG ('ILLIST', K(14), MS*3)
CALL MDLONG ('IBARST', K(15), MS)
CALL MDLONG ('JMAT', K(16), MS)
CALL MDLONG ('JCENT', K(17), MS)
CALL MDLONG ('NLPB', K(18), MS)
CALL MDLONG ('JFLINE', K(19), MS)
CALL MDLONG ('JLLIST', K(20), MS*3)
CALL MDLONG ('IREGN', K(21), MR)
CALL MDLONG ('IMAT', K(22), MR)
CALL MDLONG ('NSPR', K(23), MR)
CALL MDLONG ('IFSIDE', K(24), MR)
CALL MDLONG ('ISLIST', K(25), MR*4)
CALL MDLONG ('IRPB', K(26), MR)
CALL MDLONG ('IPBF', K(27), MP)
CALL MDLONG ('NPPF', K(28), MP)
CALL MDLONG ('IFPB', K(29), MP)
CALL MDLONG ('LISTPB', K(30), MP*2)
CALL MDLONG ('ILBF', K(31), ML)
CALL MDLONG ('NLPF', K(32), ML)
CALL MDLONG ('IFLB', K(33), ML)
CALL MDLONG ('LISTLB', K(34), ML*2)
CALL MDLONG ('ISBF', K(35), ML)
CALL MDLONG ('NSPF', K(36), ML)
CALL MDLONG ('IFSB', K(37), ML)
CALL MDLONG ('LISTSB', K(38), ML*2)
CALL MDLONG ('ATTRIB', K(39), MA*(MR + MS))
CALL MDLONG ('LINKP', K(40), MP*2)
CALL MDLONG ('LINKL', K(41), ML*2)
CALL MDLONG ('LINKS', K(42), MS*2)
CALL MDLONG ('LINKB', K(43), MS*2)
CALL MDLONG ('LINKR', K(44), MR*2)
CALL MDLONG ('LINKM', K(45), (MS + MR)*2)
CALL MDLONG ('LINKSC', K(46), MR*2)
CALL MDLONG ('LINKPB', K(47), MP*2)
CALL MDLONG ('LINKLB', K(48), ML*2)
CALL MDLONG ('LINKSB', K(49), ML*2)
CALL MDLONG ('REXTRM', K(50), MR*4)
CALL MDLONG ('IHOLDP', K(51), MP*2)
CALL MDLONG ('IHOLDL', K(52), ML*2)
CALL MDLONG ('IHOLDS', K(53), MS*2)
CALL MDLONG ('IHOLDB', K(54), MS*2)
CALL MDLONG ('IHOLDR', K(55), MR*2)
CALL MDLONG ('IHOLDM', K(56), (MS + MR)*2)
CALL MDLONG ('IHOLD1', K(57), MP*2)
CALL MDLONG ('IHOLD2', K(58), ML*2)
CALL MDLONG ('IHOLD3', K(59), ML*2)
CALL MDLONG ('IWTPBF', K(60), MP*3)
CALL MDLONG ('IWTLBF', K(61), ML*3)
CALL MDLONG ('IWTSBF', K(62), ML*3)
CALL MDLONG ('RSIZE', K(63), MR)
CALL MDLONG ('IFHOLE', K(64), MR)
CALL MDLONG ('NHPR', K(65), MR)
CALL MDLONG ('IHLIST', K(66), MR)
CALL MDLONG ('IRGFLG', K(67), MR)
CALL MDSTAT (NERR, MUSED)
IF (NERR .GT. 0) THEN
CALL MDEROR (6)
STOP' '
END IF
C RESORT THE LINK ARRAYS
CALL LTNEW (ML, IA(K(51)))
CALL LTADD (ML, MLOLD, N(1), IA(K(40)), IA(K(51)))
CALL LTNEW (ML, IA(K(51)))
CALL LTNEW (ML, IA(K(52)))
CALL LTADD (ML, MLOLD, N(2), IA(K(41)), IA(K(52)))
CALL LTNEW (ML, IA(K(52)))
CALL LTNEW (MS, IA(K(53)))
CALL LTADD (MS, MSOLD, N(3), IA(K(42)), IA(K(53)))
CALL LTNEW (MS, IA(K(53)))
CALL LTNEW (MS, IA(K(54)))
CALL LTADD (MS, MSOLD, N(5), IA(K(43)), IA(K(54)))
CALL LTNEW (MS, IA(K(54)))
CALL LTNEW (MR, IA(K(55)))
CALL LTADD (MR, MROLD, N(7), IA(K(44)), IA(K(55)))
CALL LTNEW (MS + MR, IA(K(56)))
CALL LTADD (MS + MR, MSOLD + MROLD, MSOLD + MROLD,
& IA(K(45)), IA(K(56)))
CALL LTNEW (MS + MR, IA(K(56)))
CALL LTNEW (MR, IA(K(55)))
CALL LTADD (MR, MROLD, N(8), IA(K(46)), IA(K(55)))
CALL LTNEW (MR, IA(K(55)))
CALL LTNEW (MP, IA(K(57)))
CALL LTADD (MP, MPOLD, N(11), IA(K(47)), IA(K(57)))
CALL LTNEW (MP, IA(K(57)))
CALL LTNEW (ML, IA(K(58)))
CALL LTADD (ML, MLOLD, N(13), IA(K(48)), IA(K(58)))
CALL LTNEW (ML, IA(K(58)))
CALL LTNEW (ML, IA(K(59)))
CALL LTADD (ML, MLOLD, N(15), IA(K(49)), IA(K(59)))
CALL MESSAGE('FILE WILL NOW BE READ AGAIN AS NEW INPUT')
GO TO 190
END IF
TBZOOM = .FALSE.
REWIND IUNIT
CLOSE (IUNIT)
END IF
C EXIT OPTION - EXITS FASTQ
ELSE IF ((CIN(ICOM)(1:2) .EQ. 'EX') .OR.
& (CIN(ICOM)(1:2) .EQ. 'ex')) THEN
ICOM = ICOM + 1
CALL STRLNG (CIN(ICOM), LEN)
IF (((LEN .GT. 1) .AND. (CIN(ICOM)(2:2) .NE. 'X')) .OR.
& ((LEN .GT. 1) .AND. (CIN(ICOM)(2:2) .NE. 'x'))) THEN
CALL HELP_FQ(6)
ELSE
CALL FEXIT (WROTE, MCOM, ICOM, JCOM, CIN, IIN, RIN, KIN,
& TIME1, BATCH, VERSN)
ENDIF
GO TO 120
C WRITE OPTION - WRITES A FASTQ DATA FILE
ELSE IF ((CIN(ICOM)(1:1) .EQ. 'W') .OR.
& (CIN(ICOM)(1:1) .EQ. 'w') .OR.
& (CIN(ICOM)(1:2) .EQ. 'BW') .OR.
& (CIN(ICOM)(1:2) .EQ. 'bw') .OR.
& (CIN(ICOM)(1:2) .EQ. 'RW') .OR.
& (CIN(ICOM)(1:2) .EQ. 'rw')) THEN
IF ((CIN(ICOM)(1:2) .EQ. 'RW') .OR.
& (CIN(ICOM)(1:2) .EQ. 'rw')) THEN
REGWRT = .TRUE.
BARWRT = .FALSE.
ELSEIF ((CIN(ICOM)(1:2) .EQ. 'BW') .OR.
& (CIN(ICOM)(1:2) .EQ. 'bw')) THEN
REGWRT = .FALSE.
BARWRT = .TRUE.
ELSE
REGWRT = .FALSE.
BARWRT = .FALSE.
ENDIF
ICOM = ICOM + 1
IUNIT = 1
200 CONTINUE
IF (ICOM .LE. JCOM) THEN
FNAME = CIN(ICOM)
ICOM = ICOM + 1
ELSE
CALL INQSTR ('FASTQ DATA FILE: ', FNAME)
END IF
OPEN (UNIT = IUNIT, FILE = FNAME, STATUS = 'NEW', ERR = 200)
CALL WRFSQ (IUNIT, MP, ML, MS, MR, MSNAP, MSC, MCOM, ICOM,
& JCOM, CIN, RIN, IIN, KIN, N, IA(K(1)), A(K(2)), IA(K(3)),
& IA(K(4)), IA(K(5)), IA(K(6)), A(K(7)), IA(K(8)), IA(K(9)),
& IA(K(10)), IA(K(11)), IA(K(12)), IA(K(13)), IA(K(14)),
& IA(K(15)), IA(K(16)), IA(K(17)), IA(K(18)), IA(K(19)),
& IA(K(20)), IA(K(21)), IA(K(22)), IA(K(23)), IA(K(24)),
& IA(K(25)), IA(K(26)), IA(K(27)), IA(K(28)), IA(K(29)),
& IA(K(30)), IA(K(31)), IA(K(32)), IA(K(33)), IA(K(34)),
& IA(K(35)), IA(K(36)), IA(K(37)), IA(K(38)), IA(K(40)),
& IA(K(41)), IA(K(42)), IA(K(43)), IA(K(44)), IA(K(46)),
& IA(K(47)), IA(K(48)), IA(K(49)), IA(K(60)), IA(K(61)),
& IA(K(62)), A(K(63)), IA(K(64)), IA(K(65)), IA(K(66)),
& IA(K(67)), ISCHM, SCHEME, NUMBER, DEFSCH, DEFSIZ, TITLE,
& OPTIM, THREE, EIGHT, NINE, SNAP, SNAPDX, NSNAP, REGWRT,
& BARWRT)
WROTE = .TRUE.
CLOSE (IUNIT)
C GET THE APPROPRIATE HELP MESSAGE
ELSE
ICOM = ICOM + 1
CALL HELP_FQ (1)
END IF
GO TO 120
10000 FORMAT (' ', 'ERROR OPENING FILE: ', A)
END