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258 lines
8.7 KiB
258 lines
8.7 KiB
<!-------- @HEADER
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!
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! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
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!
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! Zoltan Toolkit for Load-balancing, Partitioning, Ordering and Coloring
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! Copyright 2012 Sandia Corporation
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! Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation,
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! the U.S. Government retains certain rights in this software.
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! modification, are permitted provided that the following conditions are
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! met:
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! 1. Redistributions of source code must retain the above copyright
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! 2. Redistributions in binary form must reproduce the above copyright
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! Questions? Contact Karen Devine kddevin@sandia.gov
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! !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
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! @HEADER
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------->
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<!doctype html public "-//w3c//dtd html 4.0 transitional//en">
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<html>
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<head>
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<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">
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<meta name="GENERATOR" content="Mozilla/4.7 [en] (X11; U; SunOS 5.6 sun4m) [Netscape]">
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<meta name="sandia.approval_type" content="formal">
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<meta name="sandia.approved" content="SAND2007-4748W">
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<meta name="author" content="Zoltan PI">
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<title>Zoltan User's Guide: Scotch Interface</title>
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</head>
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<body bgcolor="#FFFFFF">
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<div align=right><b><i><a href="ug.html">Zoltan User's Guide</a>
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| <a href="ug_alg_hier.html">Next</a> | <a href="ug_alg_parmetis.html">Previous</a></i></b></div>
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<h2>
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<a NAME="PT-Scotch"></a>Graph partitioning: Scotch/PT-Scotch</h2>
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<p>
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For more information about graph partitioning, see <a href="ug_alg_parmetis.html">ParMetis</a>.
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</p>
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<p>
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Scotch is a library for ordering and partitioning, developed at LaBRI in Bordeaux, France. PT-Scotch is the parallel module in Scotch. (We use the name PT-Scotch when it applies only to parallel version, Scotch when it concerns at least the serial version.) Scotch is a third-party library in Zoltan and should be obtained separately from the <a href="https://www.labri.fr/perso/pelegrin/scotch/">Scotch web site</a>. Currently, Zoltan supports version 5.1 of Scotch, compiled with the support of PT-Scotch and <i>int</i> coding for vertices, not <i>long</i> (on architectures where <i>sizeof(int) != sizeof(long)</i>).
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<p>
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If the parameter <a href="#SCOTCH_TYPE">SCOTCH_TYPE</a> is set to LOCAL and the number of processors
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is 1 (e.g., mpirun -np 1), the sequential version of Scotch is called.
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</p>
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<p>
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Both the serial (Scotch) and the parallel (PT-Scotch) compute k-way partitioning by doing recursive bisection.
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</p>
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<p>
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Scotch must be used in the context LB_APPROACH=partition, to balance poorly distributed data. Unlike ParMetis, Scotch doesn't support the multiconstraint partitioning feature. However, for single constraint partitioning it seems to produce better results than ParMetis although it requires less memory.
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</p>
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<table WIDTH="100%" NOSAVE >
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<tr>
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<td valign="top"><b>Value of LB_METHOD:</b></td>
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<td><b>GRAPH</b></td>
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</tr>
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<tr>
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<td valign="top"><b>Value of GRAPH_PACKAGE:</b></td>
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<td><b>Scotch</b></td>
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</tr>
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<tr>
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<td><b>Parameters:</b></td>
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<td></td>
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</tr>
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<tr>
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<td valign="top"><i> LB_APPROACH<br>
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</i></td>
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<td>The load balancing approach:. <br>
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<i>PARTITION</i> - partition from scratch, not taking
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the current data distribution into account<br>
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<tr>
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<td VALIGN=TOP> <i>SCOTCH_METHOD</i></td>
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<td>For now, always set to RBISECT</td>
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</tr>
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<tr>
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<td VALIGN=TOP> <i>SCOTCH_STRAT</i></td>
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<td>The Scotch strategy string; see the Scotch documentation.</td>
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</tr>
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<tr>
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<td VALIGN=TOP> <i>SCOTCH_STRAT_FILE</i></td>
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<td>A file that contains an arbitrary long Scotch strategy string; see the Scotch documentation.</td>
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</tr>
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<tr>
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<td VALIGN=TOP> <a NAME="SCOTCH_TYPE"></a><i>SCOTCH_TYPE</i></td>
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<td>Whether or not the parallel library is used. The default value is
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<i>GLOBAL</i> and if not set to <i>LOCAL</i>, the parallel graph
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partitioning is used.</td>
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</tr>
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<tr nosave="" valign="top">
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<td> <i>CHECK_GRAPH</i></td>
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<td nosave="">Level of error checking for graph input: 0 = no
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checking, 1
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= on-processor checking, 2 = full checking. (CHECK_GRAPH==2 is very
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slow
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and should be used only during debugging).</td>
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</tr>
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<tr nosave="" valign="top">
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<td> <i>SCATTER_GRAPH</i></td>
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<td nosave="">Scatter graph data by distributing contiguous
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chunks of objects
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(vertices) of roughly equal size to each processor before calling the
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partitioner.
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0 = don't scatter;
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1 = scatter only if all objects are on a single processor;
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2 = scatter if at least one processor owns no objects;
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3 = always scatter. </td>
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</tr>
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<tr nosave="" valign="top">
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<td> <i>GRAPH_SYMMETRIZE</i></td>
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<td nosave="">How to symmetrize the graph:
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NONE = graph is symmetric and no symmetrization is needed <br/>
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TRANSPOSE = if M is adjacency matrix of the input graph, output will be the graph representation of M+M<sup>T</sup> <br/>
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BIPARTITE = graph is symmetrized in a bipartite way : [[ 0 M ][M<sup>t</sup> 0]]
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</td>
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</tr>
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<tr nosave="" valign="top">
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<td> <i>GRAPH_SYM_WEIGHT</i></td>
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<td nosave="">How edge weights are handled during symmetrization:
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ADD = weights of each arc are added <br/>
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MAX = only the heaviest arc weight is kept <br/>
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<!-- ERROR = fail if complementary arcs don't have the same weight. -->
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<p>See more informations about graph build options on this <a href="ug_graph_build.html">page</a></p>
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</td>
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</tr>
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<tr>
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<td valign="top"><b>Default values:</b></td>
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<td><br>
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</td>
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</tr>
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<tr>
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<td><br>
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</td>
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<td><i>LB_APPROACH</i> = Partition</td>
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</tr>
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<tr>
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<td><br>
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</td>
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<td><i>SCOTCH_METHOD</i> = RBISECT</td>
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</tr>
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<tr>
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<td><br>
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</td>
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<td><i>SCOTCH_STRAT</i> = "" (default Scotch strategy)</td>
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</tr>
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<tr>
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<td><br>
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</td>
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<td><i>SCOTCH_STRAT_FILE</i> = "" (default Scotch strategy)</td>
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</tr>
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<tr>
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<td><br>
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</td>
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<td><i>CHECK_GRAPH</i> = 1</td>
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</tr>
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<tr>
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<td><br>
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</td>
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<td><i>SCATTER_GRAPH </i>= 1</td>
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</tr>
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<tr>
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<td><br>
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</td>
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<td><i>GRAPH_SYMMETRIZE </i>= NONE</td>
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</tr>
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<tr>
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<td><br>
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</td>
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<td><i>GRAPH_SYM_WEIGHT </i>= ADD</td>
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</tr>
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<tr>
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<td VALIGN=TOP><b>Required Query Functions:</b></td>
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<td></td>
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</tr>
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<tr>
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<td></td>
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<td><b><a href="ug_query_lb.html#ZOLTAN_NUM_OBJ_FN">ZOLTAN_NUM_OBJ_FN</a></b></td>
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</tr>
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<tr>
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<td></td>
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<td><b><a href="ug_query_lb.html#ZOLTAN_OBJ_LIST_FN">ZOLTAN_OBJ_LIST_FN</a></b>
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</td>
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</tr>
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<tr VALIGN=TOP>
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<td></td>
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<td NOSAVE>
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<b><a href="ug_query_lb.html#ZOLTAN_NUM_EDGES_MULTI_FN">ZOLTAN_NUM_EDGES_MULTI_F
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N</a></b> or
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<b><a href="ug_query_lb.html#ZOLTAN_NUM_EDGES_FN">ZOLTAN_NUM_EDGES_FN</a></b>
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<br>
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<b><a href="ug_query_lb.html#ZOLTAN_EDGE_LIST_MULTI_FN">ZOLTAN_EDGE_LIST_MULTI_F
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N</a></b> or
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<b><a href="ug_query_lb.html#ZOLTAN_EDGE_LIST_FN">ZOLTAN_EDGE_LIST_FN</a></b>
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</td>
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</tr>
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</table>
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<p>
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<hr WIDTH="100%">[<a href="ug.html">Table of Contents</a> | <a href="ug_alg_hier.html">Next:
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Hybrid Hierarchical Partitioning</a> | <a href="ug_alg_parmetis.html">Previous:
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ParMETIS</a> | <a href="https://www.sandia.gov/general/privacy-security/index.html">Privacy and Security</a>]
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</body>
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</html>
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