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132 lines
3.8 KiB
132 lines
3.8 KiB
2 years ago
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"""
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vtkImageExportToArray - a NumPy front-end to vtkImageExport
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This class converts a VTK image to a Numeric Python array.
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To use this class, you must have the LLNL Numeric Python distribution
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(http://numpy.sf.net)
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Methods
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SetInput(input) -- connect to VTK image pipeline
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GetArray() -- execute pipeline and return a Numeric array
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Convert VTK_UNSIGNED_SHORT to python Int
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(this might be necessary because Python doesn't support unsigned short,
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the default is to cast unsigned short to signed short).
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SetConvertUnsignedShortToInt(yesno)
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ConvertUnsignedShortToIntOn()
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ConvertUnsignedShortToIntOff()
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From vtkImageExport
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GetDataExtent()
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GetDataSpacing()
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GetDataOrigin()
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"""
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import Numeric
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import umath
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from vtk import vtkImageExport
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from vtkConstants import *
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_NEW_NUMERIC = 0
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try:
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val = float(Numeric.__version__)
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except ValueError:
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_NEW_NUMERIC = 0
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else:
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if val > 20.0:
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_NEW_NUMERIC = 1
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else:
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_NEW_NUMERIC = 0
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class vtkImageExportToArray:
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def __init__(self):
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self.__export = vtkImageExport()
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self.__ConvertUnsignedShortToInt = 0
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# type dictionary: note that python doesn't support
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# unsigned integers!
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__typeDict = { VTK_CHAR:Numeric.Int8,
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VTK_UNSIGNED_CHAR:Numeric.UnsignedInt8,
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VTK_SHORT:Numeric.Int16,
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VTK_UNSIGNED_SHORT:Numeric.Int16,
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VTK_INT:Numeric.Int32,
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VTK_FLOAT:Numeric.Float32,
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VTK_DOUBLE:Numeric.Float64 }
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__sizeDict = { VTK_CHAR:1,
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VTK_UNSIGNED_CHAR:1,
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VTK_SHORT:2,
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VTK_UNSIGNED_SHORT:2,
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VTK_INT:4,
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VTK_FLOAT:4,
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VTK_DOUBLE:8 }
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# convert unsigned shorts to ints, to avoid sign problems
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def SetConvertUnsignedShortToInt(self,yesno):
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self.__ConvertUnsignedShortToInt = yesno
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def GetConvertUnsignedShortToInt(self):
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return self.__ConvertUnsignedShortToInt
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def ConvertUnsignedShortToIntOn(self):
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self.__ConvertUnsignedShortToInt = 1
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def ConvertUnsignedShortToIntOff(self):
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self.__ConvertUnsignedShortToInt = 0
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# set the input
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def SetInput(self,input):
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return self.__export.SetInput(input)
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def GetInput(self):
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return self.__export.GetInput()
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def GetArray(self):
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input = self.__export.GetInput()
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input.UpdateInformation()
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type = input.GetScalarType()
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extent = input.GetWholeExtent()
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numComponents = input.GetNumberOfScalarComponents()
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dim = (extent[5]-extent[4]+1,
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extent[3]-extent[2]+1,
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extent[1]-extent[0]+1)
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if (numComponents > 1):
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dim = dim + (numComponents,)
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size = dim[0]*dim[1]*dim[2]*numComponents*self.__sizeDict[type]
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if _NEW_NUMERIC:
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imArray = Numeric.zeros((size,),Numeric.UnsignedInt8)
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self.__export.Export(imArray)
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else:
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imString = Numeric.zeros((size,),
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Numeric.UnsignedInt8).tostring()
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self.__export.Export(imString)
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imArray = Numeric.fromstring(imString,self.__typeDict[type])
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# just to remind myself of the dangers of memory management
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del imString
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# reshape array appropriately.
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imArray = Numeric.reshape(imArray, dim)
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# convert unsigned short to int to avoid sign issues
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if (type == VTK_UNSIGNED_SHORT and self.__ConvertUnsignedShortToInt):
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imArray = umath.bitwise_and(imArray.astype(Numeric.Int32),0xffff)
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return imArray
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def GetDataExtent(self):
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return self.__export.GetDataExtent()
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def GetDataSpacing(self):
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return self.__export.GetDataSpacing()
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def GetDataOrigin(self):
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return self.__export.GetDataOrigin()
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