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530 lines
18 KiB
530 lines
18 KiB
2 years ago
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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
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* Copyright by The HDF Group. *
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* All rights reserved. *
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* *
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* This file is part of HDF5. The full HDF5 copyright notice, including *
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* terms governing use, modification, and redistribution, is contained in *
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* the COPYING file, which can be found at the root of the source code *
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* distribution tree, or in https://www.hdfgroup.org/licenses. *
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* If you do not have access to either file, you may request a copy from *
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* help@hdfgroup.org. *
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* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
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package test;
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import static org.junit.Assert.assertFalse;
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import static org.junit.Assert.assertTrue;
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import static org.junit.Assert.fail;
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import java.io.File;
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import hdf.hdf5lib.H5;
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import hdf.hdf5lib.HDF5Constants;
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import hdf.hdf5lib.exceptions.HDF5Exception;
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import hdf.hdf5lib.exceptions.HDF5LibraryException;
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import org.junit.After;
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import org.junit.Before;
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import org.junit.Rule;
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import org.junit.Test;
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import org.junit.rules.TestName;
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public class TestH5T {
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@Rule
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public TestName testname = new TestName();
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private static final String H5_FILE = "testT.h5";
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long H5fid = HDF5Constants.H5I_INVALID_HID;
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long H5strdid = HDF5Constants.H5I_INVALID_HID;
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private final void _deleteFile(String filename)
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{
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File file = null;
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try {
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file = new File(filename);
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}
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catch (Throwable err) {
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}
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if (file.exists()) {
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try {
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file.delete();
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}
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catch (SecurityException e) {
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}
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}
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}
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@Before
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public void createH5file() throws NullPointerException, HDF5Exception
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{
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assertTrue("H5 open ids is 0", H5.getOpenIDCount() == 0);
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System.out.print(testname.getMethodName());
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H5fid = H5.H5Fcreate(H5_FILE, HDF5Constants.H5F_ACC_TRUNC, HDF5Constants.H5P_DEFAULT,
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HDF5Constants.H5P_DEFAULT);
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assertTrue("H5.H5Fcreate", H5fid > 0);
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H5strdid = H5.H5Tcopy(HDF5Constants.H5T_C_S1);
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assertTrue("H5.H5Tcopy", H5strdid > 0);
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H5.H5Fflush(H5fid, HDF5Constants.H5F_SCOPE_LOCAL);
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}
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@After
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public void deleteH5file() throws HDF5LibraryException
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{
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if (H5strdid >= 0)
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try {
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H5.H5Tclose(H5strdid);
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}
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catch (Exception ex) {
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}
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if (H5fid > 0)
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try {
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H5.H5Fclose(H5fid);
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}
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catch (Exception ex) {
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}
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_deleteFile(H5_FILE);
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System.out.println();
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}
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@Test(expected = HDF5LibraryException.class)
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public void testH5Tequal_type_error() throws Throwable
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{
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H5.H5Tequal(HDF5Constants.H5T_INTEGER, H5strdid);
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}
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@Test
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public void testH5Tget_class()
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{
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try {
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int result = H5.H5Tget_class(H5strdid);
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assertTrue("H5.H5Tget_class", result > 0);
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String class_name = H5.H5Tget_class_name(result);
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assertTrue("H5.H5Tget_class", class_name.compareTo("H5T_STRING") == 0);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tget_class: " + err);
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}
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}
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@Test
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public void testH5Tget_size()
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{
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long dt_size = -1;
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try {
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dt_size = H5.H5Tget_size(H5strdid);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tget_size:H5.H5Tget_size " + err);
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}
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assertTrue("testH5Tget_size", dt_size > 0);
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}
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@Test
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public void testH5Tset_size()
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{
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long dt_size = 5;
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try {
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H5.H5Tset_size(H5strdid, dt_size);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tset_size:H5.H5Tset_size " + err);
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}
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try {
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dt_size = H5.H5Tget_size(H5strdid);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tget_size:H5.H5Tget_size " + err);
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}
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assertTrue("testH5Tget_size", dt_size == 5);
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}
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@Test
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public void testH5Tarray_create()
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{
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long filetype_id = HDF5Constants.H5I_INVALID_HID;
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long[] adims = {3, 5};
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try {
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filetype_id = H5.H5Tarray_create(HDF5Constants.H5T_STD_I64LE, 2, adims);
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assertTrue("testH5Tarray_create", filetype_id >= 0);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tarray_create.H5Tarray_create " + err);
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}
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finally {
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if (filetype_id >= 0)
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try {
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H5.H5Tclose(filetype_id);
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}
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catch (Exception ex) {
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}
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}
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}
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@Test
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public void testH5Tget_array_ndims()
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{
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long filetype_id = HDF5Constants.H5I_INVALID_HID;
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int ndims = 0;
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long[] adims = {3, 5};
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try {
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filetype_id = H5.H5Tarray_create(HDF5Constants.H5T_STD_I64LE, 2, adims);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tarray_create.H5Tarray_create " + err);
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}
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assertTrue("testH5Tget_array_ndims:H5Tarray_create", filetype_id >= 0);
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try {
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ndims = H5.H5Tget_array_ndims(filetype_id);
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assertTrue("testH5Tget_array_ndims", ndims == 2);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tget_array_ndims.H5Tget_array_ndims " + err);
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}
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finally {
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if (filetype_id >= 0)
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try {
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H5.H5Tclose(filetype_id);
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}
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catch (Exception ex) {
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}
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}
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}
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@Test
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public void testH5Tget_array_dims()
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{
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long filetype_id = HDF5Constants.H5I_INVALID_HID;
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int ndims = 0;
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long[] adims = {3, 5};
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long[] rdims = new long[2];
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try {
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filetype_id = H5.H5Tarray_create(HDF5Constants.H5T_STD_I64LE, 2, adims);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tarray_create.H5Tarray_create " + err);
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}
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assertTrue("testH5Tget_array_dims:H5Tarray_create", filetype_id >= 0);
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try {
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ndims = H5.H5Tget_array_dims(filetype_id, rdims);
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assertTrue("testH5Tget_array_dims", ndims == 2);
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assertTrue("testH5Tget_array_dims", adims[0] == rdims[0]);
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assertTrue("testH5Tget_array_dims", adims[1] == rdims[1]);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tget_array_dims.H5Tget_array_dims " + err);
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}
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finally {
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if (filetype_id >= 0)
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try {
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H5.H5Tclose(filetype_id);
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}
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catch (Exception ex) {
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}
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}
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}
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@Test
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public void testH5Tenum_functions()
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{
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long filetype_id = HDF5Constants.H5I_INVALID_HID;
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String enum_type = "Enum_type";
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byte[] enum_val = new byte[1];
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String enum_name = null;
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// Create a enumerate datatype
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try {
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filetype_id = H5.H5Tcreate(HDF5Constants.H5T_ENUM, (long)1);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tenum_functions:H5Tcreate " + err);
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}
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assertTrue("testH5Tenum_functions:H5Tcreate", filetype_id >= 0);
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try {
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enum_val[0] = 10;
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H5.H5Tenum_insert(filetype_id, "RED", enum_val);
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enum_val[0] = 11;
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H5.H5Tenum_insert(filetype_id, "GREEN", enum_val);
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enum_val[0] = 12;
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H5.H5Tenum_insert(filetype_id, "BLUE", enum_val);
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enum_val[0] = 13;
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H5.H5Tenum_insert(filetype_id, "ORANGE", enum_val);
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enum_val[0] = 14;
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H5.H5Tenum_insert(filetype_id, "YELLOW", enum_val);
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// Query member number and member index by member name, for enumeration type.
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assertTrue("Can't get member number", H5.H5Tget_nmembers(filetype_id) == 5);
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assertTrue("Can't get correct index number", H5.H5Tget_member_index(filetype_id, "ORANGE") == 3);
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// Commit enumeration datatype and close it */
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H5.H5Tcommit(H5fid, enum_type, filetype_id, HDF5Constants.H5P_DEFAULT, HDF5Constants.H5P_DEFAULT,
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HDF5Constants.H5P_DEFAULT);
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H5.H5Tclose(filetype_id);
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// Open the dataytpe for query
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filetype_id = H5.H5Topen(H5fid, enum_type, HDF5Constants.H5P_DEFAULT);
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assertTrue("testH5Tenum_functions:H5Tcreate", filetype_id >= 0);
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// Query member number and member index by member name, for enumeration type
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assertTrue("Can't get member number", H5.H5Tget_nmembers(filetype_id) == 5);
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assertTrue("Can't get correct index number", H5.H5Tget_member_index(filetype_id, "ORANGE") == 3);
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// Query member value by member name, for enumeration type
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H5.H5Tenum_valueof(filetype_id, "ORANGE", enum_val);
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assertTrue("Incorrect value for enum member", enum_val[0] == 13);
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// Query member value by member index, for enumeration type
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H5.H5Tget_member_value(filetype_id, 2, enum_val);
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assertTrue("Incorrect value for enum member", enum_val[0] == 12);
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// Query member name by member value, for enumeration type
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enum_val[0] = 14;
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enum_name = H5.H5Tenum_nameof(filetype_id, enum_val, 16);
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assertTrue("Incorrect name for enum member", enum_name.compareTo("YELLOW") == 0);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tenum_functions:query " + err);
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}
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finally {
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if (filetype_id >= 0)
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try {
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H5.H5Tclose(filetype_id);
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}
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catch (Exception ex) {
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}
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}
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}
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@Test
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public void testH5Tenum_create_functions()
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{
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long filetype_id = HDF5Constants.H5I_INVALID_HID;
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byte[] enum_val = new byte[1];
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// Create a enumerate datatype
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try {
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filetype_id = H5.H5Tenum_create(HDF5Constants.H5T_NATIVE_INT);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tenum_create_functions:H5Tcreate " + err);
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}
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assertTrue("testH5Tenum_create_functions:H5Tcreate", filetype_id >= 0);
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try {
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enum_val[0] = 10;
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H5.H5Tenum_insert(filetype_id, "RED", enum_val);
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enum_val[0] = 11;
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H5.H5Tenum_insert(filetype_id, "GREEN", enum_val);
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enum_val[0] = 12;
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H5.H5Tenum_insert(filetype_id, "BLUE", enum_val);
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enum_val[0] = 13;
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H5.H5Tenum_insert(filetype_id, "ORANGE", enum_val);
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enum_val[0] = 14;
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H5.H5Tenum_insert(filetype_id, "YELLOW", enum_val);
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// Query member number and member index by member name, for enumeration type.
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assertTrue("Can't get member number", H5.H5Tget_nmembers(filetype_id) == 5);
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assertTrue("Can't get correct index number", H5.H5Tget_member_index(filetype_id, "ORANGE") == 3);
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}
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catch (Throwable err) {
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err.printStackTrace();
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fail("testH5Tenum_create_functions:H5Tget_nmembers " + err);
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}
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finally {
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if (filetype_id >= 0)
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try {
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|
|
H5.H5Tclose(filetype_id);
|
||
|
|
}
|
||
|
|
catch (Exception ex) {
|
||
|
|
}
|
||
|
|
}
|
||
|
|
}
|
||
|
|
|
||
|
|
@Test
|
||
|
|
public void testH5Topaque_functions()
|
||
|
|
{
|
||
|
|
long filetype_id = HDF5Constants.H5I_INVALID_HID;
|
||
|
|
String opaque_name = null;
|
||
|
|
|
||
|
|
// Create a opaque datatype
|
||
|
|
try {
|
||
|
|
filetype_id = H5.H5Tcreate(HDF5Constants.H5T_OPAQUE, (long)4);
|
||
|
|
}
|
||
|
|
catch (Throwable err) {
|
||
|
|
err.printStackTrace();
|
||
|
|
fail("testH5Topaque_functions:H5Tcreate " + err);
|
||
|
|
}
|
||
|
|
assertTrue("testH5Topaque_functions:H5Tcreate", filetype_id >= 0);
|
||
|
|
|
||
|
|
try {
|
||
|
|
H5.H5Tset_tag(filetype_id, "opaque type");
|
||
|
|
opaque_name = H5.H5Tget_tag(filetype_id);
|
||
|
|
assertTrue("Incorrect tag for opaque type", opaque_name.compareTo("opaque type") == 0);
|
||
|
|
}
|
||
|
|
catch (Throwable err) {
|
||
|
|
err.printStackTrace();
|
||
|
|
fail("testH5Topaque_functions:H5Tset_get_tag " + err);
|
||
|
|
}
|
||
|
|
finally {
|
||
|
|
if (filetype_id >= 0)
|
||
|
|
try {
|
||
|
|
H5.H5Tclose(filetype_id);
|
||
|
|
}
|
||
|
|
catch (Exception ex) {
|
||
|
|
}
|
||
|
|
}
|
||
|
|
}
|
||
|
|
|
||
|
|
@Test
|
||
|
|
public void testH5Tvlen_create()
|
||
|
|
{
|
||
|
|
long filetype_id = HDF5Constants.H5I_INVALID_HID;
|
||
|
|
|
||
|
|
try {
|
||
|
|
filetype_id = H5.H5Tvlen_create(HDF5Constants.H5T_C_S1);
|
||
|
|
assertTrue("testH5Tvlen_create", filetype_id >= 0);
|
||
|
|
|
||
|
|
// Check if datatype is VL type
|
||
|
|
int vlclass = H5.H5Tget_class(filetype_id);
|
||
|
|
assertTrue("testH5Tvlen_create:H5Tget_class", vlclass == HDF5Constants.H5T_VLEN);
|
||
|
|
assertFalse("testH5Tis_variable_str:H5Tget_class", vlclass == HDF5Constants.H5T_STRING);
|
||
|
|
}
|
||
|
|
catch (Throwable err) {
|
||
|
|
err.printStackTrace();
|
||
|
|
fail("testH5Tvlen_create.H5Tvlen_create " + err);
|
||
|
|
}
|
||
|
|
finally {
|
||
|
|
if (filetype_id >= 0)
|
||
|
|
try {
|
||
|
|
H5.H5Tclose(filetype_id);
|
||
|
|
}
|
||
|
|
catch (Exception ex) {
|
||
|
|
}
|
||
|
|
}
|
||
|
|
}
|
||
|
|
|
||
|
|
@Test
|
||
|
|
public void testH5Tis_variable_str()
|
||
|
|
{
|
||
|
|
long filetype_id = HDF5Constants.H5I_INVALID_HID;
|
||
|
|
|
||
|
|
try {
|
||
|
|
filetype_id = H5.H5Tcopy(HDF5Constants.H5T_C_S1);
|
||
|
|
assertTrue("testH5Tis_variable_str.H5Tcopy: ", filetype_id >= 0);
|
||
|
|
|
||
|
|
// Convert to variable-length string
|
||
|
|
H5.H5Tset_size(filetype_id, HDF5Constants.H5T_VARIABLE);
|
||
|
|
|
||
|
|
// Check if datatype is VL string
|
||
|
|
int vlclass = H5.H5Tget_class(filetype_id);
|
||
|
|
assertTrue("testH5Tis_variable_str:H5Tget_class", vlclass == HDF5Constants.H5T_STRING);
|
||
|
|
assertFalse("testH5Tvlen_create:H5Tget_class", vlclass == HDF5Constants.H5T_VLEN);
|
||
|
|
|
||
|
|
assertTrue("testH5Tis_variable_str:H5Tis_variable_str", H5.H5Tis_variable_str(filetype_id));
|
||
|
|
|
||
|
|
// Verify that the class detects as a string
|
||
|
|
assertTrue("testH5Tis_variable_str:H5Tdetect_class",
|
||
|
|
H5.H5Tdetect_class(filetype_id, HDF5Constants.H5T_STRING));
|
||
|
|
}
|
||
|
|
catch (Throwable err) {
|
||
|
|
err.printStackTrace();
|
||
|
|
fail("testH5Tis_variable_str " + err);
|
||
|
|
}
|
||
|
|
finally {
|
||
|
|
if (filetype_id >= 0)
|
||
|
|
try {
|
||
|
|
H5.H5Tclose(filetype_id);
|
||
|
|
}
|
||
|
|
catch (Exception ex) {
|
||
|
|
}
|
||
|
|
}
|
||
|
|
}
|
||
|
|
|
||
|
|
@Test
|
||
|
|
public void testH5Tcompound_functions()
|
||
|
|
{
|
||
|
|
long filetype_id = HDF5Constants.H5I_INVALID_HID;
|
||
|
|
|
||
|
|
// Create a compound datatype
|
||
|
|
try {
|
||
|
|
filetype_id = H5.H5Tcreate(HDF5Constants.H5T_COMPOUND, (long)16);
|
||
|
|
}
|
||
|
|
catch (Throwable err) {
|
||
|
|
err.printStackTrace();
|
||
|
|
fail("testH5Tcompound_functions:H5Tcreate " + err);
|
||
|
|
}
|
||
|
|
assertTrue("testH5Tcompound_functions:H5Tcreate", filetype_id >= 0);
|
||
|
|
try {
|
||
|
|
H5.H5Tinsert(filetype_id, "Lon", 0, HDF5Constants.H5T_NATIVE_DOUBLE);
|
||
|
|
H5.H5Tinsert(filetype_id, "Lat", 8, HDF5Constants.H5T_NATIVE_DOUBLE);
|
||
|
|
|
||
|
|
// Query member number and member index by member name, for enumeration type.
|
||
|
|
assertTrue("Can't get member number", H5.H5Tget_nmembers(filetype_id) == 2);
|
||
|
|
assertTrue("Can't get correct index number", H5.H5Tget_member_index(filetype_id, "Lat") == 1);
|
||
|
|
|
||
|
|
// We started to support this function for compound type in 1.8.6 release.
|
||
|
|
int order = H5.H5Tget_order(filetype_id);
|
||
|
|
assertFalse("Can't get order for compound type.", order == HDF5Constants.H5T_ORDER_ERROR);
|
||
|
|
assertTrue("Wrong order for this type.",
|
||
|
|
(order == HDF5Constants.H5T_ORDER_LE) || (order == HDF5Constants.H5T_ORDER_BE));
|
||
|
|
|
||
|
|
// Make certain that the correct classes can be detected
|
||
|
|
assertTrue("Can't get correct class",
|
||
|
|
H5.H5Tdetect_class(filetype_id, HDF5Constants.H5T_COMPOUND));
|
||
|
|
assertTrue("Can't get correct class", H5.H5Tdetect_class(filetype_id, HDF5Constants.H5T_FLOAT));
|
||
|
|
// Make certain that an incorrect class is not detected
|
||
|
|
assertFalse("Can get incorrect class", H5.H5Tdetect_class(filetype_id, HDF5Constants.H5T_TIME));
|
||
|
|
|
||
|
|
// Query member name by member index
|
||
|
|
String index_name = H5.H5Tget_member_name(filetype_id, 0);
|
||
|
|
assertTrue("Incorrect name for member index", index_name.compareTo("Lon") == 0);
|
||
|
|
|
||
|
|
// Query member offset by member no
|
||
|
|
long index_offset = H5.H5Tget_member_offset(filetype_id, 1);
|
||
|
|
assertTrue("Incorrect offset for member no", index_offset == 8);
|
||
|
|
|
||
|
|
// Query member type by member index
|
||
|
|
long index_type = H5.H5Tget_member_type(filetype_id, 0);
|
||
|
|
assertTrue("Incorrect type for member index",
|
||
|
|
H5.H5Tequal(HDF5Constants.H5T_NATIVE_DOUBLE, index_type));
|
||
|
|
if (index_type >= 0)
|
||
|
|
try {
|
||
|
|
H5.H5Tclose(index_type);
|
||
|
|
}
|
||
|
|
catch (Exception ex) {
|
||
|
|
}
|
||
|
|
}
|
||
|
|
catch (Throwable err) {
|
||
|
|
err.printStackTrace();
|
||
|
|
fail("testH5Tcompound_functions:query " + err);
|
||
|
|
}
|
||
|
|
finally {
|
||
|
|
if (filetype_id >= 0)
|
||
|
|
try {
|
||
|
|
H5.H5Tclose(filetype_id);
|
||
|
|
}
|
||
|
|
catch (Exception ex) {
|
||
|
|
}
|
||
|
|
}
|
||
|
|
}
|
||
|
|
}
|